Ants, Bees, Genomes & Evolution

@ Queen Mary University London

We teach on several courses, including:

Much of the material we use is QMUL’s QMPlus content management system. Some of the material we use is on GitHub or provided below.

2016 Bioinformatics & Population Genomics

Practicals prepared with Rodrigo Pracana, Julien Roux, Rob Waterhouse and Stefan Schiffels for a 1 week Bioinformatics & Population Genomics course. [Overview slides]. We use similar material for QMUL’s Bioinformatics MSc and our Ecological and Evolutionary Genomics MSc:

2016 Learning how to program in R

As biology is becoming a data science its increasingly important to be able to wrangle large datasets. We use variations of the following for QMUL's SBC361 (3rd year Research Methods) and Bio781p (MSc Statistics & Bioinformatics):

Ecological and Evolutionary Genomics

Our students did some great blogging.

2016: Ecoevo @ Wordpress

2015: SBC322 @ Winnower

2014: QMEcoEvoGenomics @ Wordpress

Evolution

1st year introduction (part of QMUL's BIO113):

2006-2010 stuff from Uni Lausanne:

  • Introduction to microarray analysis: Three hour practical for 3rd year Biology students. Download normalized affimterix data, blindly use Limma to find significant genes, cluster them with TMEV, conduct GO analysis of one cluster… conclude about confounding factors in experimental design.
  • Introduction to BLAST: Two hour practical for 2nd year biology students. Calculate score & evalue of an alignment by hand… compare with true Blast results obtained on NCBI, see that blastp and blastn have different sensitivities. Check some new NCBI blast features.

Semester programming projects: